species:   Rhsol
pid:       PID0507
parent:    Rhi-milR-169
paralog:   
locus:     KB317710.1:103990-104100
matures:   ['UUGGGGCAAAUAUUAGGAACUGUUG', 'AUGGUCCAAAAGUAUUGGCUCCCUCAAGUG']
srr:       SRR1994875
genome:    /Users/jax/+Genomes/Fungal_genomes/Rhsol.AFRT00000000.1_scaffolds.fa
alignment: /media/data/njohnson/+SeqLibraries/FunHP_libraries/Lin2016-hq.SRR1994875.cram
call:      samtools view /media/data/njohnson/+SeqLibraries/FunHP_libraries/Lin2016-hq.SRR1994875.cram KB317710.1:103990-104100

1 out of bounds
50 alignments
34 proper strand
2 stranded perfect matches

                 ******************                        ************************                            
CACAUAGGUAACUCCUGCCUUGGGGCAAAUAUUAGGAACUGUUGUUAUCUACUAUGGUCCAAAAGUAUUGGCUCCCUCAAGUGUUUCAGUUGCCACCUAUACCUCCUGUAC
......(((((((...(((((((((..((((((.(((.((((.((.....)).)))))))...)))))).....))))))).))...))))))).................
-------------------UUGGGGCAAAUAUUAGGAACUGUUG------------------------------------------------------------------- l=25 a=0 c
-----------------------------------------------------AUGGUCCAAAAGUAUUGGCUCCCUCAAGUG---------------------------- l=30 a=0 c*
-------------------------------------------------------------AAAGUAUUGGCUCCCUCAAGUG---------------------------- l=22 a=1 ma
-------------------UUGGGGCAAAUAUUAG---------------------------------------------------------------------------- l=16 a=0 ma*

-------------------------------------------------------------AAAGUAUUGGCUCCCUCAAGUG---------------------------- l=22 a=1 (ma)
---------------------GGGGCAAAUAUUAGGAACUGU--------------------------------------------------------------------- l=21 a=1 
--------------------UGGGGCAAAUAUUAGGAuCUGU--------------------------------------------------------------------- l=22 a=1 
--------------------UGGGGCAAAUAUUAGGAuCUGUU-------------------------------------------------------------------- l=23 a=4 
--------------------UGGGGCAAAUAUUAGGAuCUGUUG------------------------------------------------------------------- l=24 a=9 
--------------------UGGGGCAAAUAgUAGGAACUGUUG------------------------------------------------------------------- l=24 a=1 
-------------------UUGGGGCAAAUAUUAGGAuCUG---------------------------------------------------------------------- l=22 a=2 
-------------------UUGGGGCAAAUAUUAGGAuCUGU--------------------------------------------------------------------- l=23 a=4 
-------------------UUGGGGCAgAUAUUAGGAACUGU--------------------------------------------------------------------- l=23 a=1 
-------------------UUGGGGCAAAUAUUAGGAuCUGUU-------------------------------------------------------------------- l=24 a=2 
-------------------UUGGGGCAAAUAUUAGGAuCUGUUG------------------------------------------------------------------- l=25 a=3 
------------------CUUGGGGCAAAUAUUAGGAuCUG---------------------------------------------------------------------- l=23 a=2 
------------------CUUGGGGCAAAUAUUAGGAuCUGU--------------------------------------------------------------------- l=24 a=3 

mb-01011
ax-1001011
ku-01
ss-110110101000
fn-001
